What do you mean exactly? Do you just want them to not attack you anymore, or do you want them to actually help you fighting other hostiles etc? Currently we don't have a mechanism in place to have actual "buddy npcs", but that's definitely planned
Well, what I mean is somehow seeing a skeleton to then attach their "soul" to a craftable book which would be made "magical" in some manner. Maybe we loot this book from the dungeons, or maybe we can craft it... Whatever works best from your POV. We could use this book to control them that even if they "die", they would still be able to be re-summoned while being safe in the book. Whatever equipment we'd give them, they'd keep, thanks to the book. I don't know how you would do this but would love to have skeletons as minions, as we find in every other RPG game out there. Skyrim, Dragon's Dogma, or whatever when you play as a 'Sorcerer', mage, or whichever.
Having them be your body guards at the least would be amusing. But if it's planned I won't pressure you, just feeling a new void opening up thanks to this update heh.
Sidenote: I keep forgetting to mention we should be able to loot from skeletons. Some skeleton bones, whatever they're wearing, and etc.